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Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01)

29 October 2018 - 2 November 2018

£275.00 - £550

Course Overview:

Analysis of high throughput genome and transcriptome data is major component of many research projects ranging from large-scale precision medicine efforts to focused investigations in model systems. This analysis involves the identification of specific genome or transcriptome features that predispose individuals to disease, predict response to therapies, influence diagnosis/prognosis, or provide mechanistic insights into disease models. During this course (IBDR01), students will perform an example end-to-end bioinformatics analysis of genome (WGS and Exome) and transcriptome (RNA-seq) data. Students will start with raw sequence data for a hypothetical case, learn to install and use the tools needed to analyze this data on the cloud, and visualize and interpret results. After completing the course, students should be in a position to (1) understand raw sequence data formats, (2) perform bioinformatics analyses on the cloud, (3) run complete analysis pipelines for alignment, variant calling, annotation, and RNA-seq (transcriptome analysis approaches will be a major component of the workshop), (4) visualize and interpret whole genome, exome and RNA-seq results, (5) leverage the identification of passenger variants for immunotherapy applications, and (6) begin to place these results in a clinical context by use of variant knowledgebases. The data, tools, and analysis will be most directly relevant to human genomics and bioinformatics research. However, many of the skills and concepts covered will be applicable to other human diseases and model organisms. Furthermore, many analysis concepts covered during the workshop will be broadly applicable to other “big data” research problems. All course materials (including copies of presentations, practical exercises, data files, and example scripts prepared by the instructing team) will be provided electronically to participants.

Intended Audience

This workshop is primarily aimed at researchers and technical workers with a background in biology who want to learn fundamental bioinformatics skills for genomics with a particular emphasis on biomedical research applications. The course is essentially a crash course in bioinformatics for next generation sequence data analysis. It would also be useful for students with a computational background who seek an introduction to genomics technology and analysis approaches. In general, it is suitable for anyone working with genome or transcriptome (RNA-seq) data in the context of disease research. Attendees are encouraged to bring their own data or project outlines for discussion. Some time during the course will be dedicated to consultation with a team of instructors from the McDonnell Genome Institute.

Venue –   PR informatics head office, 53 Morrison Street, Glasgow, G5 8LB – Google map
Availability – 30 places
Duration – 5 days
Contact hours – Approx. 37 hours
ECT’s – Equal to 3 ECT’s
Language – English

Packages

We offer COURSE ONLY and ACCOMMODATION PACKAGES;
• COURSE ONLY – Includes lunch and refreshments.
• ACCOMMODATION PACKAGE (to be purchased in addition to the course only option) – Includes breakfast, lunch, welcome dinner Monday evening, farewell dinner Thursday evening, refreshments and accommodation. Self-catering facilities are available in the accommodation. Accommodation is approximately a 6-minute walk from the PR informatics head office. Accommodation is multiple occupancy (max 3-4 people) single sex en-suite rooms. Arrival Sunday 28th October (after 5pm) and departure Friday 2nd November (accommodation must be vacated by 9am). An additional nights accommodation can be purchased, departure 9am Saturday morning email for details.

To book ‘COURSE ONLY’ with the option to add the additional ‘ACCOMMODATION PACKAGE’ please scroll to the bottom of this page.

Other payment options are available please email oliverhooker@prinformatics.com

Cancellation policy: Cancellations are accepted up to 28 days before the course start date subject to a 25% cancellation fee. Cancellations later than this may be considered, contact oliverhooker@prinformatics.com Failure to attend will result in the full cost of the course being charged. In the unfortunate event that PRinformatics must cancel this course due to unforeseen circumstances a full refund for the course will be credited. However PRinformatics cannot be held responsible for any travel fees, accommodation or other expenses incurred to you as a result of the cancellation.

 

1235

Dr. Malachi Griffith

1235

Dr. Obi Griffith

Teaching Format
Course Programme

Details

Start:
29 October 2018
End:
2 November 2018
Cost:
£275.00 - £550

Venue

PR informatics head office
53 Morrison Street
Glasgow, Scotland G5 8LB United Kingdom
+ Google Map
Phone:
07966500340
Website:
www.prinformatics.com

Tickets

22 available
PMBI01 ' COURSE ONLY'£550.00‘COURSE ONLY’ £550.00 Places 1-24
24 available
PMBI01 ‘ACCOMMODATION PACKAGE’£275.00‘ACCOMMODATION PACKAGE’ £270.00 Places 1-24